If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ), 'gf_id' => 'HOM05D000730', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000730' ), 'data_identifier' => 'HOM05D000730', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000730', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p18730' => 'bna', 'A04p19990' => 'bna', 'A04p25720' => 'bna', 'A07p00630' => 'bna', 'A09p27470' => 'bna', 'A09p67840' => 'bna', 'A10p02890' => 'bna', 'A10p28770' => 'bna', 'Aa31LG1G20420' => 'aar', 'Aa31LG5G3870' => 'aar', 'Aa31LG5G9880' => 'aar', 'Aa31LG8G16950' => 'aar', 'Aa31LG9G10680' => 'aar', 'Aa31sc24G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.792' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4217' => 'aag', 'Actinidia02031' => 'ach', 'Actinidia06224' => 'ach', 'Actinidia11362' => 'ach', 'Actinidia14533' => 'ach', 'Actinidia14534' => 'ach', 'Actinidia14675' => 'ach', 'Actinidia20416' => 'ach', 'Actinidia39919' => 'ach', 'Actinidia39920' => 'ach', 'Ah.04g155400' => 'amhyb', 'Ah.10g030070' => 'amhyb', 'Ah.10g035020' => 'amhyb', 'Ah.12g057520' => 'amhyb', 'Ah.13g072330' => 'amhyb', 'Ah.14g082530' => 'amhyb', 'Ah.16g105790' => 'amhyb', 'AL1G14120' => 'aly', 'AL3G48100' => 'aly', 'AL4G17520' => 'aly', 'AL4G29090' => 'aly', 'AL6G14340' => 'aly', 'AL6G17130' => 'aly', 'AL6G46270' => 'aly', 'Aqoxy239s004' => 'aox', 'Aqoxy239s005' => 'aox', 'Aqoxy2G00416' => 'aox', 'Aqoxy2G03720' => 'aox', 'Aqoxy2G03737' => 'aox', 'Aqoxy5G03962' => 'aox', 'Aqoxy7G01481' => 'aox', 'Aqoxy7G03900' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y58GL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76PVGY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.827X5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I68MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9MRD07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAB1TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL82TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1D0JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9M3N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLD8XB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H567TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB4HM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEL5AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSU96X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4QJX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXK8C3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDU287' => 'arhy', 'AT1G04470' => 'ath', 'AT2G20010' => 'ath', 'AT2G25800' => 'ath', 'AT2G33420' => 'ath', 'AT4G11670' => 'ath', 'AT5G06970' => 'ath', 'ATR0705G218' => 'atr', 'ATR0736G217' => 'atr', 'ATR0757G158' => 'atr', 'ATR1096G139' => 'atr', 'Atru.chr12.1287' => 'acertr', 'Atru.chr4.1957' => 'acertr', 'Atru.chr7.1436_Atru.chr7.1437' => 'acertr', 'Atru.chr7.2087' => 'acertr', 'Atru.chr9.1560' => 'acertr', 'AUR62002176' => 'cqu', 'AUR62009277' => 'cqu', 'AUR62010634' => 'cqu', 'AUR62010923' => 'cqu', 'AUR62015533' => 'cqu', 'AUR62017277' => 'cqu', 'AUR62021434' => 'cqu', 'AUR62031742' => 'cqu', 'AUR62032627' => 'cqu', 'AUR62037191' => 'cqu', 'AUR62039704' => 'cqu', 'BcaB01g01672' => 'bca', 'BcaB03g16789' => 'bca', 'BcaB05g25310' => 'bca', 'BcaB05g25314' => 'bca', 'BcaB06g28087' => 'bca', 'BcaB06g28685' => 'bca', 'BcaB06g28686' => 'bca', 'BcaB08g35224' => 'bca', 'BcaB08g35225' => 'bca', 'BcaB08g35226' => 'bca', 'BcaB08g35227' => 'bca', 'BcaC01g05841' => 'bca', 'BcaC02g07826' => 'bca', 'BcaC02g07828' => 'bca', 'BcaC02g08328' => 'bca', 'BcaC04g21166' => 'bca', 'BcaC06g32528' => 'bca', 'BcaC06g36674' => 'bca', 'BcaC07g42177' => 'bca', 'BcaNung04208' => 'bca', 'BcaNung06866' => 'bca', 'BcaNung06922' => 'bca', 'BcaNung06939' => 'bca', 'BolC3t14571H' => 'bol', 'BolC4t27094H' => 'bol', 'BolC4t27771H' => 'bol', 'BolC5t29045H' => 'bol', 'BolC7t40563H' => 'bol', 'BolC8t52752H' => 'bol', 'BolC9t56324H' => 'bol', 'BolC9t59655H' => 'bol', 'BraA03t11133Z' => 'bra', 'BraA04t17582Z' => 'bra', 'BraA04t18076Z' => 'bra', 'BraA07t27860Z' => 'bra', 'BraA09t38315Z' => 'bra', 'BraA09t42117Z' => 'bra', 'BraA10t42556Z' => 'bra', 'BraA10t44924Z' => 'bra', 'C03p21890' => 'bna', 'C04p55630' => 'bna', 'C04p62880' => 'bna', 'C05p02640' => 'bna', 'C07p01510' => 'bna', 'C08p52180' => 'bna', 'C09p34790' => 'bna', 'C09p69110' => 'bna', 'CAN.G134.13' => 'can', 'CAN.G171.7' => 'can', 'CAN.G220.53' => 'can', 'CAN.G220.55' => 'can', 'CAN.G400.5' => 'can', 'CAN.G400.6' => 'can', 'CAN.G638.44' => 'can', 'CAN.G981.10' => 'can', 'CAN.G981.11' => 'can', 'CANSAT21G0309' => 'cansat', 'CANSAT25G1141' => 'cansat', 'CANSAT56G2406' => 'cansat', 'CANSAT56G2780' => 'cansat', 'CARHR003810' => 'chi', 'CARHR110480' => 'chi', 'CARHR115440' => 'chi', 'CARHR127430' => 'chi', 'CARHR206170' => 'chi', 'CARHR254700' => 'chi', 'Carub.0001s0366' => 'cru', 'Carub.0003s3426' => 'cru', 'Carub.0004s0559' => 'cru', 'Carub.0004s1505' => 'cru', 'Carub.0006s0590' => 'cru', 'Ca_04670_v3' => 'car', 'Ca_11224_v3' => 'car', 'Ca_11938_v3' => 'car', 'Ca_15590_v3' => 'car', 'Ca_23976_v3' => 'car', 'Ca_30491_v3' => 'car', 'CBR_g23529' => 'cbr', 'CBR_g5715' => 'cbr', 'Cc00_g07550' => 'ccan', 'Cc03_g05970' => 'ccan', 'Cc06_g10270' => 'ccan', 'Cc08_g09580' => 'ccan', 'Cc08_g14160' => 'ccan', 'CDE01G0004' => 'cde', 'CDE01G0067' => 'cde', 'CDE01G0705' => 'cde', 'CDE01G0765' => 'cde', 'CDE02G3135' => 'cde', 'CDE02G4545' => 'cde', 'CDE04G1445' => 'cde', 'CDE05G0913' => 'cde', 'CDE05G1512' => 'cde', 'CDE09G0864' => 'cde', 'CDE09G1286' => 'cde', 'Cfa003203' => 'cfa', 'Cfa012119' => 'cfa', 'Cfa013366' => 'cfa', 'Cfa014763' => 'cfa', 'Ciclev10001785m.g' => 'ccl', 'Ciclev10003518m.g' => 'ccl', 'Ciclev10003854m.g' => 'ccl', 'Ciclev10004224m.g' => 'ccl', 'Ciclev10007340m.g' => 'ccl', 'Ciclev10007350m.g' => 'ccl', 'Ciclev10023740m.g' => 'ccl', 'CiPaw.01G180400' => 'cil', 'CiPaw.02G108300' => 'cil', 'CiPaw.03G226700' => 'cil', 'CiPaw.04G159300' => 'cil', 'CiPaw.07G204100' => 'cil', 'CiPaw.08G025900' => 'cil', 'CiPaw.11G139500' => 'cil', 'CiPaw.13G015400' => 'cil', 'ClCG00G000280' => 'cla', 'ClCG00G001770' => 'cla', 'ClCG05G004090' => 'cla', 'ClCG05G026970' => 'cla', 'ClCG08G012220' => 'cla', 'ClCG10G003540' => 'cla', 'ClCG10G005860' => 'cla', 'COL.COLO4_05255' => 'col', 'COL.COLO4_13885' => 'col', 'COL.COLO4_15936' => 'col', 'COL.COLO4_20721' => 'col', 'COL.COLO4_20971' => 'col', 'COL.COLO4_34778' => 'col', 'COL.COLO4_34779' => 'col', 'Cpa.g.c24654.1' => 'cpa', 'Cpa.g.c44717' => 'cpa', 'Cpa.g.sc108.42' => 'cpa', 'Cpa.g.sc169.47' => 'cpa', 'Cpa.g.sc1735.1' => 'cpa', 'Cpa.g.sc40.45' => 'cpa', 'Cpa.g.sc44.19' => 'cpa', 'Cpa.g.sc74.60' => 'cpa', 'Cpa.g.sc74.62' => 'cpa', 'Cre11.g467500' => 'cre', 'CsaV3_2G030850' => 'csa', 'CsaV3_3G003550' => 'csa', 'CsaV3_3G005520' => 'csa', 'CsaV3_3G011810' => 'csa', 'CsaV3_5G036910' => 'csa', 'CSS0001883' => 'camsi', 'CSS0005351' => 'camsi', 'CSS0007649' => 'camsi', 'CSS0015644' => 'camsi', 'CSS0025631' => 'camsi', 'CSS0026791' => 'camsi', 'CSS0030717' => 'camsi', 'CSS0034725' => 'camsi', 'CSS0035856' => 'camsi', 'CSS0037618' => 'camsi', 'CSS0042423' => 'camsi', 'CSS0042895' => 'camsi', 'CSS0045085' => 'camsi', 'CSS0048078' => 'camsi', 'CSS0050520' => 'camsi', 'DCAR_000307' => 'dca', 'DCAR_000308' => 'dca', 'DCAR_000753' => 'dca', 'DCAR_004665' => 'dca', 'DCAR_006604' => 'dca', 'DCAR_010475' => 'dca', 'DCAR_012050' => 'dca', 'DCAR_018286' => 'dca', 'DCAR_027335' => 'dca', 'DCAR_028665' => 'dca', 'DCAR_030758' => 'dca', 'Dinv27093' => 'din', 'Dinv27903' => 'din', 'Dinv27904' => 'din', 'Dinv29822' => 'din', 'Dinv36702' => 'din', 'Dinv38994' => 'din', 'Dinv41657' => 'din', 'Dinv44710' => 'din', 'Duzib052G1196' => 'dzi', 'Duzib068G0713' => 'dzi', 'Duzib114G0880' => 'dzi', 'Duzib128G1742' => 'dzi', 'Duzib150G0630' => 'dzi', 'Duzib150G1007' => 'dzi', 'Duzib151G0815' => 'dzi', 'Duzib168G2130' => 'dzi', 'Duzib168G2244' => 'dzi', 'Duzib187G1057' => 'dzi', 'ECA233G4024' => 'eca', 'ECA234G3316' => 'eca', 'ECA236G3986' => 'eca', 'ECA246G5324' => 'eca', 'ECA248G1154' => 'eca', 'ECA248G3571' => 'eca', 'EL10Ac2g02767' => 'bvu', 'EL10Ac2g03229' => 'bvu', 'EL10Ac2g04017' => 'bvu', 'EL10Ac3g04965' => 'bvu', 'EL10Ac3g06158' => 'bvu', 'EL10Ac5g10959' => 'bvu', 'EL10Ac5g12746' => 'bvu', 'EL10Ac8g18406' => 'bvu', 'Eucgr.C02936' => 'egr', 'Eucgr.C03784' => 'egr', 'Eucgr.E00552' => 'egr', 'Eucgr.H00137' => 'egr', 'Eucgr.H02977' => 'egr', 'Eucgr.J00067' => 'egr', 'FAN03G3014' => 'fan', 'FAN04G2748' => 'fan', 'FAN06G3967' => 'fan', 'FAN08G1404' => 'fan', 'FAN09G3391' => 'fan', 'FAN10G2667' => 'fan', 'FAN12G3489' => 'fan', 'FAN15G2316' => 'fan', 'FAN17G2335' => 'fan', 'FAN18G2185' => 'fan', 'FAN19G0986' => 'fan', 'FAN20G0473' => 'fan', 'FAN22G0448' => 'fan', 'FAN23G1003' => 'fan', 'FAN26G1100' => 'fan', 'FAN26G2753' => 'fan', 'FAN27G2696' => 'fan', 'FAN28G0700' => 'fan', 'FvH4_1g05840' => 'fve', 'FvH4_2g35590' => 'fve', 'FvH4_4g04280' => 'fve', 'FvH4_5g01750' => 'fve', 'FvH4_7g03630' => 'fve', 'Glyma.01G009400' => 'gma', 'Glyma.02G078900' => 'gma', 'Glyma.04G084300' => 'gma', 'Glyma.05G227800' => 'gma', 'Glyma.06G086000' => 'gma', 'Glyma.10G062500' => 'gma', 'Glyma.10G136800' => 'gma', 'Glyma.10G189200' => 'gma', 'Glyma.13G192900' => 'gma', 'Glyma.15G162900' => 'gma', 'Glyma.15G230600' => 'gma', 'Glyma.15G231200' => 'gma', 'Glyma.16G077200' => 'gma', 'Glyma.16G162200' => 'gma', 'Glyma.20G086400' => 'gma', 'Glyma.20G201500' => 'gma', 'Gohir.A01G025300' => 'ghi', 'Gohir.A02G041700' => 'ghi', 'Gohir.A03G018300' => 'ghi', 'Gohir.A05G025600' => 'ghi', 'Gohir.A05G046600' => 'ghi', 'Gohir.A05G283200' => 'ghi', 'Gohir.A06G066100' => 'ghi', 'Gohir.A07G007901' => 'ghi', 'Gohir.A08G249900' => 'ghi', 'Gohir.A09G228100' => 'ghi', 'Gohir.A10G108000' => 'ghi', 'Gohir.A13G186366' => 'ghi', 'Gohir.A13G186432' => 'ghi', 'Gohir.D01G023403' => 'ghi', 'Gohir.D02G047400' => 'ghi', 'Gohir.D03G153300' => 'ghi', 'Gohir.D04G126650' => 'ghi', 'Gohir.D05G027100' => 'ghi', 'Gohir.D05G048300' => 'ghi', 'Gohir.D05G048400' => 'ghi', 'Gohir.D05G284200' => 'ghi', 'Gohir.D06G064700' => 'ghi', 'Gohir.D07G008333' => 'ghi', 'Gohir.D08G270700' => 'ghi', 'Gohir.D09G229200' => 'ghi', 'Gohir.D10G159800' => 'ghi', 'Gohir.D12G076201' => 'ghi', 'Gohir.D13G193200' => 'ghi', 'Gorai.001G008200' => 'gra', 'Gorai.002G025900' => 'gra', 'Gorai.002G198100' => 'gra', 'Gorai.003G160900' => 'gra', 'Gorai.004G288600' => 'gra', 'Gorai.005G052600' => 'gra', 'Gorai.006G251900' => 'gra', 'Gorai.009G027200' => 'gra', 'Gorai.009G049700' => 'gra', 'Gorai.009G298800' => 'gra', 'Gorai.010G075600' => 'gra', 'Gorai.011G112100' => 'gra', 'Gorai.011G179500' => 'gra', 'Gorai.013G219200' => 'gra', 'GSVIVG01015324001' => 'vvi', 'GSVIVG01019827001' => 'vvi', 'GSVIVG01027878001' => 'vvi', 'GSVIVG01035623001' => 'vvi', 'GSVIVG01036645001' => 'vvi', 'HanXRQChr01g0022891' => 'han', 'HanXRQChr03g0068471' => 'han', 'HanXRQChr04g0108711' => 'han', 'HanXRQChr04g0119551' => 'han', 'HanXRQChr06g0165441' => 'han', 'HanXRQChr08g0228861' => 'han', 'HanXRQChr10g0305761' => 'han', 'HanXRQChr16g0510621' => 'han', 'HanXRQChr17g0568761' => 'han', 'Haze_03002' => 'cav', 'Haze_08931' => 'cav', 'Haze_11438' => 'cav', 'Haze_21889' => 'cav', 'Haze_25804' => 'cav', 'Hma1.2p1_0012F.1_g007300' => 'hma', 'Hma1.2p1_0112F.1_g054540' => 'hma', 'Hma1.2p1_0121F.1_g057430' => 'hma', 'Hma1.2p1_1468F.1_g285520' => 'hma', 'Hma1.2p1_2003F.1_g310800' => 'hma', 'Hma1.2p1_2517F.1_g323710' => 'hma', 'HPP92_006374' => 'vpl', 'HPP92_007385' => 'vpl', 'HPP92_007386' => 'vpl', 'HPP92_021195' => 'vpl', 'HPP92_021196' => 'vpl', 'HPP92_024092' => 'vpl', 'HPP92_025836' => 'vpl', 'Hund09239' => 'sun', 'Hund15746' => 'sun', 'Hund19513' => 'sun', 'Hund28788' => 'sun', 'Hund28789' => 'sun', 'Lalb_Chr01g0007371' => 'lal', 'Lalb_Chr01g0007381' => 'lal', 'Lalb_Chr01g0007391' => 'lal', 'Lalb_Chr03g0032161' => 'lal', 'Lalb_Chr03g0035491' => 'lal', 'Lalb_Chr06g0169431' => 'lal', 'Lalb_Chr09g0331441' => 'lal', 'Lalb_Chr09g0331451' => 'lal', 'Lalb_Chr09g0331461' => 'lal', 'Lalb_Chr11g0064501' => 'lal', 'Lalb_Chr14g0371781' => 'lal', 'Lalb_Chr19g0128441' => 'lal', 'Lalb_Chr19g0130121' => 'lal', 'Lalb_Chr19g0130131' => 'lal', 'Lalb_Chr19g0132961' => 'lal', 'Lalb_Chr21g0312431' => 'lal', 'Lalb_Chr22g0352591' => 'lal', 'Lalb_Chr23g0269631' => 'lal', 'Lalb_Chr24g0401321' => 'lal', 'Lj1g0004750' => 'lja', 'Lj2g0021527' => 'lja', 'Lj2g0027137' => 'lja', 'Lj3A676T30' => 'lonja', 'Lj3g0012169' => 'lja', 'Lj4A409T48' => 'lonja', 'Lj4C406T2' => 'lonja', 'Lj5g0022043' => 'lja', 'Lj6C624G2' => 'lonja', 'Lj6g0020771' => 'lja', 'Lj7A700T54' => 'lonja', 'Lj7A700T55' => 'lonja', 'Lj8A236G37' => 'lonja', 'Lj8A236T44' => 'lonja', 'Lj8A236T45' => 'lonja', 'Lj9A659G48' => 'lonja', 'Lj9A659T52' => 'lonja', 'Lsat_1_v5_gn_1_46361' => 'lsa', 'Lsat_1_v5_gn_1_46601' => 'lsa', 'Lsat_1_v5_gn_1_75181' => 'lsa', 'Lsat_1_v5_gn_3_52940' => 'lsa', 'Lsat_1_v5_gn_3_5660' => 'lsa', 'Lsat_1_v5_gn_3_8441' => 'lsa', 'Lsat_1_v5_gn_4_95640' => 'lsa', 'Lsat_1_v5_gn_5_50861' => 'lsa', 'Lsat_1_v5_gn_6_42840' => 'lsa', 'Lsat_1_v5_gn_6_68900' => 'lsa', 'Lsat_1_v5_gn_7_31081' => 'lsa', 'Lsat_1_v5_gn_7_40220' => 'lsa', 'Lsat_1_v5_gn_8_96680' => 'lsa', 'Lsat_1_v5_gn_9_92560' => 'lsa', 'Lsat_1_v5_gn_9_93581' => 'lsa', 'Manes.01G065400' => 'mes', 'Manes.03G161500' => 'mes', 'Manes.04G156900' => 'mes', 'Manes.15G043900' => 'mes', 'Manes.16G075400' => 'mes', 'Manes.16G110800' => 'mes', 'Mapoly0046s0120' => 'mpo', 'Mapoly0116s0011' => 'mpo', 'Mapoly0125s0045' => 'mpo', 'MapolyY_A0029' => 'mpo', 'MBI01_g33728_MAGBIO' => 'mbi', 'MBI01_g37439_MAGBIO' => 'mbi', 'MBI01_g37440_MAGBIO' => 'mbi', 'MBI04_g45216_MAGBIO' => 'mbi', 'MBI07_g20244_MAGBIO' => 'mbi', 'MBI10_g19241_MAGBIO' => 'mbi', 'MBI12_g43910_MAGBIO' => 'mbi', 'MBI12_g47134_MAGBIO' => 'mbi', 'MBI12_g48014_MAGBIO' => 'mbi', 'MBI19_g36134_MAGBIO' => 'mbi', 'MD00G1110400' => 'mdo', 'MD02G1060400' => 'mdo', 'MD02G1278500' => 'mdo', 'MD07G1046600' => 'mdo', 'MD08G1113600' => 'mdo', 'MD13G1219000' => 'mdo', 'MD15G1093300' => 'mdo', 'MD15G1193900' => 'mdo', 'MD16G1224300' => 'mdo', 'Medtr1g044480' => 'mtr', 'Medtr1g073760' => 'mtr', 'Medtr1g114190' => 'mtr', 'Medtr1g114270' => 'mtr', 'Medtr3g109630' => 'mtr', 'Medtr6g043090' => 'mtr', 'Medtr8g040190' => 'mtr', 'MELO3C006388.2' => 'cme', 'MELO3C011140.2' => 'cme', 'MELO3C012490.2' => 'cme', 'MELO3C014023.2' => 'cme', 'MELO3C016625.2' => 'cme', 'Migut.A00203' => 'egut', 'Migut.A00938' => 'egut', 'Migut.B01242' => 'egut', 'Migut.G00493' => 'egut', 'Migut.K00524' => 'egut', 'Migut.N00290' => 'egut', 'MSTRG.11697' => 'ama', 'MSTRG.1659' => 'ama', 'MSTRG.21922' => 'ama', 'MSTRG.24667' => 'ama', 'MSTRG.26377' => 'ama', 'MSTRG.4157' => 'ama', 'Nitab4.5_0000012g0040' => 'nta', 'Nitab4.5_0001425g0030' => 'nta', 'Nitab4.5_0001894g0030' => 'nta', 'Nitab4.5_0002838g0080' => 'nta', 'Nitab4.5_0003199g0030' => 'nta', 'Nitab4.5_0003268g0020' => 'nta', 'Nitab4.5_0003794g0070' => 'nta', 'Nitab4.5_0003924g0080' => 'nta', 'Nitab4.5_0005213g0040' => 'nta', 'Nitab4.5_0005420g0020' => 'nta', 'Nitab4.5_0007849g0010' => 'nta', 'Nitab4.5_0009633g0020' => 'nta', 'Nn1g02910' => 'nnu', 'Nn2g11620' => 'nnu', 'Nn2g11621' => 'nnu', 'Nn3g19744' => 'nnu', 'Nn6g34206' => 'nnu', 'Nn7g36786' => 'nnu', 'Nn8g39126' => 'nnu', 'Oeu014760.1' => 'oeu', 'Oeu029096.1' => 'oeu', 'Oeu029784.2' => 'oeu', 'Oeu031104.1' => 'oeu', 'Oeu031105.1' => 'oeu', 'Oeu031691.1' => 'oeu', 'Oeu043629.1' => 'oeu', 'Oeu052502.1' => 'oeu', 'Oeu053156.1' => 'oeu', 'Oeu055246.1' => 'oeu', 'Oeu059402.1' => 'oeu', 'Oeu064135.2' => 'oeu', 'Os03g0138600' => 'osa', 'Os04g0568800' => 'osa', 'Os04g0568850' => 'osa', 'Os05g0281400' => 'osa', 'Os08g0390100' => 'osa', 'Os09g0346700' => 'osa', 'Os10g0471000' => 'osa', 'Peaxi162Scf00001g00129' => 'pax', 'Peaxi162Scf00082g00018' => 'pax', 'Peaxi162Scf00227g00720' => 'pax', 'Peaxi162Scf00319g00811' => 'pax', 'Peaxi162Scf00602g00611' => 'pax', 'Peaxi162Scf00714g00334' => 'pax', 'PGR004G1006' => 'pgr', 'PGR042G2616' => 'pgr', 'PGR044G0565' => 'pgr', 'PGR044G1589' => 'pgr', 'PGR102G2343' => 'pgr', 'PGSC0003DMG400002233' => 'stu', 'PGSC0003DMG400013455' => 'stu', 'PGSC0003DMG400017158' => 'stu', 'PGSC0003DMG400027431' => 'stu', 'PGSC0003DMG401001701' => 'stu', 'PGSC0003DMG401006827' => 'stu', 'PGSC0003DMG402006827' => 'stu', 'PGSC0003DMG402021129' => 'stu', 'Phvul.002G310100' => 'pvu', 'Phvul.004G085288' => 'pvu', 'Phvul.004G169900' => 'pvu', 'Phvul.007G271400' => 'pvu', 'Phvul.009G109900' => 'pvu', 'Phvul.011G124001' => 'pvu', 'Phvul.011G201400' => 'pvu', 'Potri.001G030100' => 'ptr', 'Potri.001G108400' => 'ptr', 'Potri.006G238200' => 'ptr', 'Potri.008G170200' => 'ptr', 'Potri.010G068000' => 'ptr', 'Potri.018G044200' => 'ptr', 'Potri.018G085900' => 'ptr', 'Pp3c15_5080' => 'ppa', 'Pp3c17_1370' => 'ppa', 'Pp3c7_24310' => 'ppa', 'Pp3c9_5740' => 'ppa', 'PRCOL_00004062' => 'pco', 'Prupe.1G045700' => 'ppe', 'Prupe.1G081000' => 'ppe', 'Prupe.1G448100' => 'ppe', 'Prupe.2G042100' => 'ppe', 'Prupe.5G093000' => 'ppe', 'Prupe.5G213200' => 'ppe', 'Prupe.7G222400' => 'ppe', 'Psat0s1767g0040' => 'psa', 'Psat0s1920g0040' => 'psa', 'Psat4g145160' => 'psa', 'Psat4g145200' => 'psa', 'Psat5g021280' => 'psa', 'Psat6g107240' => 'psa', 'Psat6g132520' => 'psa', 'Psat6g146520' => 'psa', 'Psat6g190280' => 'psa', 'Psat6g233320' => 'psa', 'Psat7g145600' => 'psa', 'Psat7g169400' => 'psa', 'PSO017G4640' => 'pso', 'PSO063G3766' => 'pso', 'PSO210G0973' => 'pso', 'PSO210G4110' => 'pso', 'PSO339G1614' => 'pso', 'PSO339G2680' => 'pso', 'PSO384G0089' => 'pso', 'PSO419G0002' => 'pso', 'PSO764G0233' => 'pso', 'PSO832G3811' => 'pso', 'PSO832G4027' => 'pso', 'QL02p042190' => 'qlo', 'QL06p020117' => 'qlo', 'QL12p017589' => 'qlo', 'QL12p041333' => 'qlo', 'RcHm_v2.0_Chr1g0326411' => 'rch', 'RcHm_v2.0_Chr2g0091501' => 'rch', 'RcHm_v2.0_Chr2g0091591' => 'rch', 'RcHm_v2.0_Chr4g0394731' => 'rch', 'RcHm_v2.0_Chr6g0306221' => 'rch', 'RcHm_v2.0_Chr7g0198971' => 'rch', 'Rhsim01G0104000' => 'rsi', 'Rhsim02G0042600' => 'rsi', 'Rhsim05G0041400' => 'rsi', 'Rhsim07G0068600' => 'rsi', 'Rhsim07G0150900' => 'rsi', 'Rhsim09G0089900' => 'rsi', 'Sabra01G0021600' => 'sbr', 'Sabra01G0081900' => 'sbr', 'Sabra06G0186400' => 'sbr', 'Sabra10G0039200' => 'sbr', 'Sabra18G0074200' => 'sbr', 'SalBow4G2421' => 'sbo', 'SalBow5G1057' => 'sbo', 'SalBow5G1336' => 'sbo', 'SalBow5G4227' => 'sbo', 'SalBow6G0430' => 'sbo', 'SalBow6G3932' => 'sbo', 'SalBow7G4770' => 'sbo', 'Sc08g0007850' => 'sci', 'Sc08g0007860' => 'sci', 'Sc09g0009290' => 'sci', 'Sc10g0004540' => 'sci', 'Sc13g0005930' => 'sci', 'Sc13g0005940' => 'sci', 'Sc13g0005950' => 'sci', 'Sc19g0003270' => 'sci', 'Sc22g0000270' => 'sci', 'Sed0003535' => 'sed', 'Sed0004211' => 'sed', 'Sed0011245' => 'sed', 'Sed0013589' => 'sed', 'Sed0021634' => 'sed', 'Sed0026891' => 'sed', 'SEGI_16380' => 'sgi', 'SEGI_17425' => 'sgi', 'SEGI_22094' => 'sgi', 'SEGI_22400' => 'sgi', 'SEGI_25964' => 'sgi', 'SEGI_27474' => 'sgi', 'SEGI_29439' => 'sgi', 'SEGI_30042' => 'sgi', 'SEGI_30944' => 'sgi', 'SGA_v2.0_scaffold103G30004' => 'sas', 'SGA_v2.0_scaffold124G33604' => 'sas', 'SGA_v2.0_scaffold129G34171' => 'sas', 'SGA_v2.0_scaffold343G49460' => 'sas', 'SGA_v2.0_scaffold43G16210' => 'sas', 'SGA_v2.0_scaffold67G22713' => 'sas', 'SHI00763' => 'shi', 'SHI11370' => 'shi', 'SHI11372' => 'shi', 'SHI11373' => 'shi', 'SHI11374' => 'shi', 'SHI11375' => 'shi', 'SHI11376' => 'shi', 'SHI18684' => 'shi', 'SMO116G0331' => 'smo', 'SMO141G0034' => 'smo', 'SMO304G0143' => 'smo', 'SMO367G1286' => 'smo', 'Solyc01g088320.2' => 'sly', 'Solyc01g088330.1' => 'sly', 'Solyc01g096540.4' => 'sly', 'Solyc01g108412.1' => 'sly', 'Solyc02g071830.3' => 'sly', 'Solyc03g005630.3' => 'sly', 'Solyc05g018180.3' => 'sly', 'Solyc05g041240.1' => 'sly', 'Solyc08g066600.4' => 'sly', 'Solyc08g080520.4' => 'sly', 'Solyc09g090480.2' => 'sly', 'Solyc12g039040.1' => 'sly', 'Sopen01g035170' => 'spe', 'Sopen01g040270' => 'spe', 'Sopen01g050270' => 'spe', 'Sopen02g020820' => 'spe', 'Sopen02g020830' => 'spe', 'Sopen03g001630' => 'spe', 'Sopen03g001640' => 'spe', 'Sopen05g014920' => 'spe', 'Sopen07g019260' => 'spe', 'Sopen08g020440' => 'spe', 'Sopen08g028840' => 'spe', 'Sopen09g033400' => 'spe', 'Sopen12g007750' => 'spe', 'Sp1g03300' => 'spa', 'Sp3g33330' => 'spa', 'Sp4g05560' => 'spa', 'Sp4g15750' => 'spa', 'Sp6g05800' => 'spa', 'Sp6g35900' => 'spa', 'TAR362G0166' => 'tar', 'TAR365G0395' => 'tar', 'TAR375G0386' => 'tar', 'TAR383G0283' => 'tar', 'TAR626G1197' => 'tar', 'TAR636G0071' => 'tar', 'THA.LOC104799323' => 'tha', 'THA.LOC104801075' => 'tha', 'THA.LOC104803756' => 'tha', 'THA.LOC104806377' => 'tha', 'THA.LOC104815998' => 'tha', 'THA.LOC104820044' => 'tha', 'Thecc.03G272900' => 'tca', 'Thecc.04G260600' => 'tca', 'Thecc.09G045400' => 'tca', 'Thecc.09G103000' => 'tca', 'Thecc.10G145500' => 'tca', 'Thhalv10001895m.g' => 'esa', 'Thhalv10001900m.g' => 'esa', 'Thhalv10006651m.g' => 'esa', 'Thhalv10012512m.g' => 'esa', 'Thhalv10017527m.g' => 'esa', 'Thhalv10028371m.g' => 'esa', 'TPR.G15110' => 'tpr', 'TPR.G15335' => 'tpr', 'TPR.G26462' => 'tpr', 'TPR.G28755' => 'tpr', 'TPR.G29621' => 'tpr', 'TPR.G4051' => 'tpr', 'TPR.G8523' => 'tpr', 'TWI09G0674' => 'twi', 'TWI09G1036' => 'twi', 'TWI32G0504' => 'twi', 'TWI34G1024' => 'twi', 'TWI34G1273' => 'twi', 'TWI53G1529' => 'twi', 'TWI60G0879' => 'twi', 'TWI63G0957' => 'twi', 'TWI81G0743' => 'twi', 'unitig_0.g2572' => 'ugi', 'unitig_26.g9549' => 'ugi', 'unitig_32.g11698' => 'ugi', 'unitig_52.g17225' => 'ugi', 'unitig_52.g17226' => 'ugi', 'unitig_52.g17227' => 'ugi', 'unitig_748.g7333' => 'ugi', 'unitig_748.g7334' => 'ugi', 'unitig_749.g14334' => 'ugi', 'unitig_88.g27671' => 'ugi', 'unitig_88.g27690' => 'ugi', 'vmacro05370' => 'vma', 'vmacro07437' => 'vma', 'vmacro10861' => 'vma', 'vmacro15467' => 'vma', 'vmacro15468' => 'vma', 'VMungo0251G0117' => 'vmu', 'VMungo0464G0203' => 'vmu', 'VMungo0464G0453' => 'vmu', 'VMungo0464G1767' => 'vmu', 'VMungo0720G0717' => 'vmu', 'VMungo0720G0798' => 'vmu', 'VMungo1127G0979' => 'vmu', 'VMungo1309G1233' => 'vmu', 'Zm00001eb003150' => 'zma', 'Zm00001eb042090' => 'zma', 'Zm00001eb046130' => 'zma', 'Zm00001eb073730' => 'zma', 'Zm00001eb098460' => 'zma', 'Zm00001eb183480' => 'zma', 'Zm00001eb285140' => 'zma', 'Zm00001eb310520' => 'zma', 'Zm00001eb354810' => 'zma' ) $gf_id = 'HOM05D000730' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000730' ) $data_identifier = 'HOM05D000730' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 23, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 19, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 12, 'spe' => (int) 13, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1